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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5950465_5950768_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5950465 - 5950768
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
GCCGCCTGAGCC
Flanking Amino Acid:
AAELPIFPQLGAQYELKESP
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
69.5
0.44
1
61.8
39.9
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
46.5
-0.2
1.8
51.68
45.2

Associated Gene:

Gene:
IRX3
Ensembl Gene ID:
ENSAPLG00000019607
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035803
5950234 - 5952340
2107