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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5951929_5952330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5951929 - 5952330
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCGCT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAAAA
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
PGAERGAPRSRSI*
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
65.8
40.2
Major BPS
49.6
-0
1.1
57.3
34.4
Major PPT
85.8
0.8
0.6
84.7
23
Minor 5ss
39.1
-1.2
3.4
56.7
47.6
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
IRX3
Ensembl Gene ID:
ENSAPLG00000019607
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035803
5950234 - 5952340
2107