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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_603092_604477_F

Intron Information:

Intron Rank:
143714
Intron Class:
major
Intron Phase:
Intron Coordinates:
603092 - 604477
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAC
5'SS Class:
major
3'SS Sequence:
TACTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAGTTTATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
71.4
35
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.4
0.71
0.9
72.8
42
Minor 5ss
39.5
-1.2
3
52.7
44.5
Minor BPS
50.3
0.01
1.7
62.23
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027440
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017860
590973 - 609076
18104