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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_604551_608951_F

Intron Information:

Intron Rank:
143715
Intron Class:
major
Intron Phase:
Intron Coordinates:
604551 - 608951
Intron Length:
4401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAATA
5'SS Class:
major
3'SS Sequence:
TTAAATCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
73.4
37.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.5
0.44
1
62.5
42.9
Minor 5ss
48.7
-0.1
2.6
66.5
44.5
Minor BPS
74.7
0.85
1.4
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027440
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017860
590973 - 609076
18104