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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_609136_623201_F

Intron Information:

Intron Rank:
143722
Intron Class:
major
Intron Phase:
Intron Coordinates:
609136 - 623201
Intron Length:
14066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATAGCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
44.3
-0.3
2.2
66.68
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027440
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043446
590973 - 628373
37401