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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6133365_6192119_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6133365 - 6192119
Intron Length:
58755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTAATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATCTTTAATC
Flanking Amino Acid:
RQRLRKEWTASDALFAESLT
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.7
0.56
1
66.8
42.7
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
81.7
0.97
1
83.02
30.1

Associated Gene:

Gene:
FTO
Ensembl Gene ID:
ENSAPLG00000016324
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040925
6133118 - 6253428
120311