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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_61578_61888_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61578 - 61888
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTCAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTAACCCAAATC
Flanking Amino Acid:
HERKNLRHYIDSVNALYTKC
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
71.7
38.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
86.5
0.82
0.6
85.2
22.1
Minor 5ss
37.6
-1.4
2.8
48.4
35
Minor BPS
48.9
-0.1
2
64.86
40.6

Associated Gene:

Gene:
ANKRD27
Ensembl Gene ID:
ENSAPLG00000011807
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012393
53478 - 88364
34887
ENSAPLT00000040364
49996 - 88364
38369
ENSAPLT00000033866
49668 - 88364
38697