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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_62095_62178_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62095 - 62178
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATGCTTAAAC
Flanking Amino Acid:
QMNMIKQAVEMYIHHAIYDL
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
59.5
0.28
1.9
68.43
42.8

Associated Gene:

Gene:
ANKRD27
Ensembl Gene ID:
ENSAPLG00000011807
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012393
53478 - 88364
34887
ENSAPLT00000040364
49996 - 88364
38369
ENSAPLT00000033866
49668 - 88364
38697