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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6229742_6238590_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6229742 - 6238590
Intron Length:
8849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
AATTTTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTGCCTTACTT
Flanking Amino Acid:
LHQGDFYLMLDDLNMTHQHC
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.8
32.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
78.6
0.64
0.8
71
40
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
70.6
0.72
1.7
87.41
38.9

Associated Gene:

Gene:
FTO
Ensembl Gene ID:
ENSAPLG00000016324
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025876
6062720 - 6250077
187358
ENSAPLT00000040925
6133118 - 6253428
120311
ENSAPLT00000022550
6062720 - 6264570
201851
ENSAPLT00000038462
6126095 - 6293896
167802
ENSAPLT00000017031
6070831 - 6293896
223066
ENSAPLT00000031057
6126095 - 6247973
121879
ENSAPLT00000028219
6062720 - 6293896
231177
ENSAPLT00000048011
6120600 - 6293896
173297