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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_62396_62771_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62396 - 62771
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAAAT
Flanking Amino Acid:
QKDIGVKPEFSFNIPRAKRE
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.7
0.49
0.9
65.8
39.8
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
57.4
0.31
1.6
77.93
38.2

Associated Gene:

Gene:
ANKRD27
Ensembl Gene ID:
ENSAPLG00000011807
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012393
53478 - 88364
34887
ENSAPLT00000040364
49996 - 88364
38369
ENSAPLT00000033866
49668 - 88364
38697