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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6246178_6247949_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6246178 - 6247949
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GGAAAAATAATT
Flanking Amino Acid:
MGGKRMLQWKTKYSKLVF
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
41.6
-0.5
1.9
55.31
39.4

Associated Gene:

Gene:
FTO
Ensembl Gene ID:
ENSAPLG00000016324
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031057
6126095 - 6247973
121879