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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_62894_63763_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62894 - 63763
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TAATATGTAATT
Flanking Amino Acid:
QIIMQSPSQRVNVEAVCADD
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
89.1
0.88
0.6
88.9
20.4
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
49.2
0.02
2.1
70.78
40.4

Associated Gene:

Gene:
ANKRD27
Ensembl Gene ID:
ENSAPLG00000011807
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040364
49996 - 88364
38369
ENSAPLT00000033866
49668 - 88364
38697
ENSAPLT00000012393
53478 - 88364
34887