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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6297902_6301433_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6297902 - 6301433

Intron Length:

3532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGGTT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTATTATTT

Flanking Amino Acid:

HANKQEEKIKRMATKLIRLV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

78.6

35.4

Major BPS

100

1.24

0.5

100

Major PPT

83.9

0.76

0.8

77.4

36.7

Minor 5ss

41.2

-1

3.7

63.6

48.1

Minor BPS

62.5

0.47

1.8

84.55

36.3

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995