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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6301733_6303921_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6301733 - 6303921
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTCA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTGCAAAAACT
Flanking Amino Acid:
AAGMLEHPKKGMRFQDLKVR
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
93.4
0.98
0.6
92.1
18.5
Minor 5ss
45.9
-0.4
2.5
59.3
45.3
Minor BPS
45.9
-0.2
2.2
71
45.3

Associated Gene:

Gene:
RPGRIP1L
Ensembl Gene ID:
ENSAPLG00000016340
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046484
6295541 - 6368877
73337
ENSAPLT00000017057
6296886 - 6368877
71992
ENSAPLT00000017056
6295698 - 6366692
70995