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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6304022_6305507_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6304022 - 6305507

Intron Length:

1486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTATGATAT

5'SS Class:

weak_major

3'SS Sequence:

CTTGTATTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTTAT

U12 Branch Point Sequence:

TTGTATTTACAG

Flanking Amino Acid:

LEDARAEIRNLEIVIGSQKK

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.8

0.33

1.1

63.7

36.8

Major BPS

76.2

0.65

1.1

65.7

43.2

Major PPT

0.74

0.9

76.4

36.7

Minor 5ss

48.6

-0.1

2.9

74.3

41.9

Minor BPS

47.9

-0.3

1.9

57.17

44.4

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995