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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6311650_6316039_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6311650 - 6316039
Intron Length:
4390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
MEGKLLQLQENQRNLKASHD
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
35.2
-1.7
2.7
43
43.8
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
RPGRIP1L
Ensembl Gene ID:
ENSAPLG00000016340
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046484
6295541 - 6368877
73337
ENSAPLT00000017057
6296886 - 6368877
71992
ENSAPLT00000017056
6295698 - 6366692
70995