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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6316187_6317330_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6316187 - 6317330
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
VTISKQRTEELQERINDLEK
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
77.6
33.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.3
0.75
0.7
82.1
28.2
Minor 5ss
36.1
-1.6
3.2
46.6
48.7
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
RPGRIP1L
Ensembl Gene ID:
ENSAPLG00000016340
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046484
6295541 - 6368877
73337
ENSAPLT00000017057
6296886 - 6368877
71992
ENSAPLT00000017056
6295698 - 6366692
70995