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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6327186_6327896_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6327186 - 6327896

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTAAAC

5'SS Class:

major

3'SS Sequence:

AATTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTCCATGCAAT

Flanking Amino Acid:

VQHKINKDYQTEVEVVTHKM

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

68.1

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

87.6

0.84

0.8

85.4

34.2

Minor 5ss

32.8

-2

3.1

43.4

43.8

Minor BPS

45.7

-0.2

2.2

73.47

42.4

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995