Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6332813_6335474_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6332813 - 6335474

Intron Length:

2662

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAGAA

U12 Branch Point Sequence:

AATAAGATAACT

Flanking Amino Acid:

ISLAHDRSISGTFELTDSER

Intron Amino Acid Position:

904

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

62.2

0.3

Major PPT

87.2

0.84

0.8

84.6

30.3

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

44.1

-0.3

2.4

66.96

42.7

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995