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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6335687_6336898_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6335687 - 6336898

Intron Length:

1212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGAGTAAT

5'SS Class:

major

3'SS Sequence:

TTTTGTATTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TGGACTTCAACC

Flanking Amino Acid:

VPSPLTASVTVPIPKPRHRA

Intron Amino Acid Position:

975

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

77.2

32.9

Major BPS

70.8

0.52

70.6

31.6

Major PPT

82.6

0.73

0.8

77.6

35.5

Minor 5ss

34.1

-1.8

2.9

47.9

41.8

Minor BPS

56.7

0.19

1.6

64.25

41.2

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995