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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6336983_6338497_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6336983 - 6338497
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
ACCCATAACTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTACCCATAACT
Flanking Amino Acid:
FLDASSIQMAGSVVENDMEH
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
54.8
0.11
0.9
51.7
36.1
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
71.8
0.76
1.6
88.11
36

Associated Gene:

Gene:
RPGRIP1L
Ensembl Gene ID:
ENSAPLG00000016340
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046484
6295541 - 6368877
73337
ENSAPLT00000017057
6296886 - 6368877
71992
ENSAPLT00000017056
6295698 - 6366692
70995