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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6338570_6340120_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6338570 - 6340120

Intron Length:

1551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGTGGTATATAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTGTTTTTATAT

Flanking Amino Acid:

KASTGPSTLEVKQERLADGK

Intron Amino Acid Position:

1027

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

76.8

31.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

55.1

0.12

1.2

58.5

45.4

Minor 5ss

38.2

-1.3

3.4

55.2

Minor BPS

51.4

0.12

1.7

67.89

43.6

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995