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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6341488_6350477_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6341488 - 6350477
Intron Length:
8990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTGG
5'SS Class:
major
3'SS Sequence:
TGTTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
ASPVSKNIKQATEKIRIEII
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
60.6
46.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.8
0.51
1
70.7
39.1
Minor 5ss
38.7
-1.3
2.9
47.8
47.7
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
RPGRIP1L
Ensembl Gene ID:
ENSAPLG00000016340
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046484
6295541 - 6368877
73337
ENSAPLT00000017057
6296886 - 6368877
71992
ENSAPLT00000017056
6295698 - 6366692
70995