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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6350662_6356691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6350662 - 6356691

Intron Length:

6030

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

ATTTGCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

ATTATATTAATT

Flanking Amino Acid:

GQRIHYNYSNVIHVDKANNR

Intron Amino Acid Position:

1176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.2

0.97

0.8

88.9

24.9

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

83.8

0.76

0.8

77.6

36.1

Minor 5ss

39.5

-1.2

2.8

48.3

41.8

Minor BPS

63.7

0.51

1.6

80.12

35.4

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995