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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6356777_6362585_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6356777 - 6362585

Intron Length:

5809

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATATT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTATGTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TCTTTCTGAACA

Flanking Amino Acid:

ILQKPDLNADSLLFTVVTDP

Intron Amino Acid Position:

1204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

84.4

33.4

Major BPS

82.1

0.8

71.6

36.4

Major PPT

74.3

0.55

0.9

73.4

36.1

Minor 5ss

39.9

-1.1

3.2

59.8

44.7

Minor BPS

73.5

0.73

1.4

79.77

36.3

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995