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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6362720_6366543_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6362720 - 6366543

Intron Length:

3824

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

GTTTTCTGATGT

Flanking Amino Acid:

ERDVIEQDIDVFDAEDDSAV

Intron Amino Acid Position:

1249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

81.6

0.71

0.8

73.8

36.8

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

49.5

0.04

73.14

43.6

Associated Gene:

Gene:

RPGRIP1L

Ensembl Gene ID:

ENSAPLG00000016340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046484

6295541 - 6368877

73337

ENSAPLT00000017057

6296886 - 6368877

71992

ENSAPLT00000017056

6295698 - 6366692

70995