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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6398239_6410009_F

Intron Information:

Intron Rank:
135581
Intron Class:
major
Intron Phase:
Intron Coordinates:
6398239 - 6410009
Intron Length:
11771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTATAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.9
40.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82
0.72
0.9
75.8
37.8
Minor 5ss
36
-1.6
3
45.9
42.4
Minor BPS
48.9
-0
1.9
71.63
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022942
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045582
6397470 - 6410635
13166