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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6408654_6409369_F

Intron Information:

Intron Rank:
135580
Intron Class:
major
Intron Phase:
Intron Coordinates:
6408654 - 6409369
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATAAGT
5'SS Class:
major
3'SS Sequence:
ATTCTTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.3
42.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.5
0.69
0.9
81
36
Minor 5ss
34.8
-1.7
3
41.5
44.7
Minor BPS
60.1
0.39
1.9
84.17
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022942
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032854
6408275 - 6410447
2173