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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6414865_6416108_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6414865 - 6416108
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATATA
5'SS Class:
major
3'SS Sequence:
TTTAATCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTGTTTTAATC
Flanking Amino Acid:
WSMSTSSVRKRPEAEEKTLT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.4
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.5
0.57
1
70.3
39.7
Minor 5ss
37.3
-1.4
3.2
50.4
46.1
Minor BPS
64.9
0.45
1.3
68.66
38.1

Associated Gene:

Gene:
AKTIP
Ensembl Gene ID:
ENSAPLG00000016399
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017121
6414751 - 6423376
8626