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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6418335_6418421_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6418335 - 6418421
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTCTTCAAAT
Flanking Amino Acid:
YVQPSYRSALMWFGVIFIRH
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
77.6
29.9
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
62.3
0.46
1.6
77.58
38.2

Associated Gene:

Gene:
AKTIP
Ensembl Gene ID:
ENSAPLG00000016399
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017121
6414751 - 6423376
8626