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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6418523_6419834_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6418523 - 6419834
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTAACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTTTCTAACT
Flanking Amino Acid:
PDNYPDGDCPRLVFDLPVFH
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
72.8
38.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.4
0.66
0.9
78.6
33.5
Minor 5ss
32.5
-2
3.2
40.9
45.4
Minor BPS
73.3
0.81
1.6
92.08
30.2

Associated Gene:

Gene:
AKTIP
Ensembl Gene ID:
ENSAPLG00000016399
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017121
6414751 - 6423376
8626