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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6419924_6419996_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6419924 - 6419996
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCTTCTTCACCA
Flanking Amino Acid:
LDVKRAFAKWRRNHNHIWQV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
86
0.81
0.7
85.4
29.4
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
50.6
0.02
1.9
62.68
44.2

Associated Gene:

Gene:
AKTIP
Ensembl Gene ID:
ENSAPLG00000016399
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017121
6414751 - 6423376
8626