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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6420096_6420310_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6420096 - 6420310
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTTAT
U12 Branch Point Sequence:
CATCGCTTATTT
Flanking Amino Acid:
TSPLNPEAAVLYEKDIQLFK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
63.9
0.35
1.2
55
42.7
Major PPT
80.7
0.69
0.8
76.7
31.9
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
48.4
-0
2
66.27
44.6

Associated Gene:

Gene:
AKTIP
Ensembl Gene ID:
ENSAPLG00000016399
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017121
6414751 - 6423376
8626