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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6429948_6430644_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6429948 - 6430644
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
AGAGAGATAATT
Flanking Amino Acid:
FYYFSSSPSKRLKEINSMIK
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
77.3
0.61
0.8
69.3
36.9
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
39
-0.7
2.3
54.02
41.2

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493