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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6433423_6433966_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6433423 - 6433966
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCAATGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGCTCCTAAGCA
Flanking Amino Acid:
MGSLSLFFRKVYHLASVRLR
Intron Amino Acid Position:
877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
64.2
0.32
1
58.3
41.7
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
55.3
0.16
2
67.93
44.4

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493