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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6434988_6435569_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6434988 - 6435569
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
VRAESGGLGKGLSSSPTTLY
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
74.8
39.7
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493