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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6436100_6436630_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6436100 - 6436630
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
GAGTTCATAATT
Flanking Amino Acid:
FDIPVYHFYKVIEVFIRAED
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
86
0.81
0.8
79.7
32.4
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
57.7
0.32
1.6
70.55
40.4

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493