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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6438315_6438992_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6438315 - 6438992
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GAAAATTTAATT
Flanking Amino Acid:
APSENLEQIFRACSRDPSQS
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
53.3
0.18
1.5
64.91
39.1

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493