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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6439160_6440074_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6439160 - 6440074
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTGTGCTTATTT
Flanking Amino Acid:
KHNLQQHFDRSKSLRITTPL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.7
0.73
0.7
81
31
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
53.1
0.17
2
72.26
45.1

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493