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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6448385_6449642_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6448385 - 6449642
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCATATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TGTTCCATATTT
Flanking Amino Acid:
LTRILRCSEQSLIEFFNKMK
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80
0.67
0.9
76.8
36.2
Minor 5ss
43.4
-0.7
2.9
58.6
45.9
Minor BPS
60.9
0.42
1.9
81.91
39.5

Associated Gene:

Gene:
RBL2
Ensembl Gene ID:
ENSAPLG00000001177
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001450
6429776 - 6450268
20493