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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6461282_6461766_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6461282 - 6461766

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TGAATTTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

ATGTTTTGAATT

Flanking Amino Acid:

FINRNKQPNHVNPGINSCQV

Intron Amino Acid Position:

2420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

85.3

25.4

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

75.3

0.57

66.2

44.9

Minor 5ss

37.5

-1.4

2.8

46.9

41.8

Minor BPS

61.8

0.45

1.4

74.34

37.1

Associated Gene:

Gene:

CHD9

Ensembl Gene ID:

ENSAPLG00000002826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038388

6456112 - 6471225

15114

ENSAPLT00000002906

6456112 - 6530331

74220