About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6462916_6463722_R

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6462916 - 6463722
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATGTTTA
5'SS Class:
weak_major
3'SS Sequence:
ATTTATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTATTTAACA
Flanking Amino Acid:
EKEFTVKINDEGGLKLTFQK
Intron Amino Acid Position:
2317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
76.7
34.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.5
0.64
1
74.1
39.5
Minor 5ss
54.4
0.15
2.3
65.4
39.5
Minor BPS
75.7
0.8
1.4
82.86
31

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038388
6456112 - 6471225
15114
ENSAPLT00000002906
6456112 - 6530331
74220