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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6465013_6466953_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6465013 - 6466953
Intron Length:
1941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTATTTAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTAGCA
Flanking Amino Acid:
DSDEEEAQKREGTAHIKAYD
Intron Amino Acid Position:
2172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
64.1
42.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.7
0.78
0.9
82
34
Minor 5ss
45.8
-0.4
2.5
55
44.5
Minor BPS
66.2
0.5
1.7
80.36
35.4

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220