About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6465013_6468097_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6465013 - 6468097
Intron Length:
3085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTAGCA
Flanking Amino Acid:
RRVCRLPSKEEGTAHIKAYD
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.5
32.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.7
0.78
0.9
82
34
Minor 5ss
29.4
-2.4
3.4
39.4
46.5
Minor BPS
66.2
0.5
1.7
80.36
35.4

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038388
6456112 - 6471225
15114