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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6467216_6467261_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6467216 - 6467261
Intron Length:
46

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCAAGGACA
5'SS Class:
major
3'SS Sequence:
TCCAAAAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GAACCTCTAACT
Flanking Amino Acid:
KTETDRRMVARVSKRGSDSS
Intron Amino Acid Position:
2085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.4
68.3
36.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
51.7
0.04
1.1
44.7
39.1
Minor 5ss
24.4
-2.9
3.9
37.6
40.8
Minor BPS
54.7
0.23
1.7
69.69
40.3

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220