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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6467864_6468097_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6467864 - 6468097
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
RRVCRLPSKEELVDPNIFIQ
Intron Amino Acid Position:
1884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.5
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.3
0.48
1
67.6
41.7
Minor 5ss
29.4
-2.4
3.4
39.4
46.5
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220