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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6470007_6470118_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6470007 - 6470118

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CACTTTTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTTACTTTAAAA

Flanking Amino Acid:

KSLLIGVFKHGYEKYNTIRA

Intron Amino Acid Position:

1688

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.8

84.9

26.3

Major BPS

73.1

0.58

79.6

29.1

Major PPT

80.6

0.69

0.8

75.8

32.5

Minor 5ss

32.1

-2

2.8

39.2

40.5

Minor BPS

0.75

1.3

81.55

33.1

Associated Gene:

Gene:

CHD9

Ensembl Gene ID:

ENSAPLG00000002826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038388

6456112 - 6471225

15114

ENSAPLT00000002906

6456112 - 6530331

74220