Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6477014_6477553_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6477014 - 6477553

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTATGTAGA

5'SS Class:

major

3'SS Sequence:

TTTATTTACTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

MSGRENSVGGIQQLSKKEIE

Intron Amino Acid Position:

1341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

63.6

42.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.8

0.72

0.9

81.4

35.2

Minor 5ss

43.2

-0.7

2.6

51.2

45.4

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

CHD9

Ensembl Gene ID:

ENSAPLG00000002826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002906

6456112 - 6530331

74220