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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6477722_6478332_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6477722 - 6478332
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTCCCTTCATT
Flanking Amino Acid:
SDWNPQNDLQAQARCHRIGQ
Intron Amino Acid Position:
1285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
66.5
0.37
1
66.5
32.2
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
65.9
0.58
1.8
81.08
41.1

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220