Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6478529_6480568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6478529 - 6480568

Intron Length:

2040

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATAC

5'SS Class:

strong_major

3'SS Sequence:

TGACAATTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTGAT

U12 Branch Point Sequence:

TTGTAGTGATCT

Flanking Amino Acid:

DILEDYLIHKRYLYERIDGR

Intron Amino Acid Position:

1219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.8

81.2

26.3

Major BPS

73.5

0.58

1.2

63.4

44.3

Major PPT

69.4

0.44

58.7

45.9

Minor 5ss

38.2

-1.3

3.1

49.9

46.6

Minor BPS

44.2

-0.3

2.4

69.79

46.6

Associated Gene:

Gene:

CHD9

Ensembl Gene ID:

ENSAPLG00000002826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002906

6456112 - 6530331

74220